A simple and elegant way to explore cancer data
Every row below was read from the vendor's own OpenAPI document. The summary text is theirs. What this registry adds is that each operation is indexed with its method, path, base URL and auth scheme, so a search for a capability can answer with a call rather than a name, and that the endpoint is probed on a schedule.
Specifications as held by the APIs.guru corpus, whose newest record is 2023-04-21. Operations the vendor has added since are not listed here; the origin links above are the vendor's own current documents.
base URLs: http://firebrowse.org/api/v1
find it by capability: POST /search {"query":{"text":"..."}} returns these
operations with their invocation detail. Connect any agent client.
A simple and elegant way to explore cancer data
| method | path | what the vendor says it does |
|---|---|---|
GET | /Analyses/CopyNumber/Genes/All | Retrieve all data by genes Gistic2 results. This service provides access to the Gistic2 all_data_by_genes.txt |
GET | /Analyses/CopyNumber/Genes/Amplified | Retrieve Gistic2 significantly amplified genes results. This service provides access to the Gistic2 amp_genes. |
GET | /Analyses/CopyNumber/Genes/Deleted | Retrieve Gistic2 significantly deleted genes results. This service provides access to the Gistic2 del_genes.co |
GET | /Analyses/CopyNumber/Genes/Focal | Retrieve focal data by genes Gistic2 results. This service provides access to the Gistic2 focal_data_by_genes. |
GET | /Analyses/CopyNumber/Genes/Thresholded | Retrieve all thresholded by genes Gistic2 results. This service provides access to the Gistic2 all_thresholded |
GET | /Analyses/FeatureTable | Retrieve aggregated analysis features table. This service returns part or all of the so-called feature table; |
GET | /Analyses/Mutation/MAF | Retrieve MutSig final analysis MAF. This service returns columns from the MAF generated by MutSig. Results may |
GET | /Analyses/Mutation/SMG | Retrieve Significantly Mutated Genes (SMG). This service provides a list of significantly mutated genes, as sc |
GET | /Analyses/Reports | Retrieve links to summary reports from Firehose analysis runs. This service returns URLs to the analysis resul |
GET | /Analyses/mRNASeq/Quartiles | Returns RNASeq expression quartiles, e.g. suitable for drawing a boxplot. For a given gene compute quartiles a |
GET | /Archives/StandardData | Retrieve standard data archives. This service returns the archive URLs for our Firehose standard data runs, pr |
GET | /Metadata/Centers | Obtain identities of TCGA consortium member centers. By default this function returns a table of all consortiu |
GET | /Metadata/ClinicalNames | Retrieve names of all TCGA clinical data elements (CDEs). Retrieve names of all patient-level clinical data el |
GET | /Metadata/ClinicalNames_FH | Retrieve names of CDEs normalized by Firehose and selected for analyses. This service returns the names of pat |
GET | /Metadata/Cohorts | Translate TCGA cohort abbreviations to full disease names. By default this function returns a table containing |
GET | /Metadata/Counts | Retrieve sample counts. Returns the aliquot counts for each disease cohort, per sample type and data type. Th |
GET | /Metadata/Dates | Retrieve dates of all GDAC Firehose stddata & analyses runs that have been ingested into FireBrowse. Metadata |
GET | /Metadata/HeartBeat | Simple way to discern whether API server is up and running Returns a message to indicate that API (server) is |
GET | /Metadata/MAFColNames | Retrieve names of all columns in the mutation annotation files (MAFs) served by FireBrowse. Retrieve the names |
GET | /Metadata/Patients | Retrieve list of all TCGA patients. This service returns a list of all TCGA patient barcodes in FireBrowse, op |
GET | /Metadata/Platforms | Translate TCGA platform codes to full platform names. By default this function returns a table of all of the t |
GET | /Metadata/SampleType/Barcode/{TCGA_Barcode} | Given a TCGA barcode, return its short letter sample type code. Metadata |
GET | /Metadata/SampleType/Code/{code} | Translate from numeric to symbolic TCGA sample codes. Convert a TCGA numeric sample type code (e.g. 01, 02) to |
GET | /Metadata/SampleType/ShortLetterCode/{short_letter_code} | Translate from symbolic to numeric TCGA sample codes. Convert a TCGA sample type code in symbolic form (or 'sh |
GET | /Metadata/SampleTypes | Return all TCGA sample type codes, both numeric and symbolic. Metadata |
GET | /Metadata/TSSites | Obtain identities of tissue source sites in TCGA. By default this function returns a table of all sites which |
GET | /Samples/Clinical | Retrieve TCGA CDEs verbatim, i.e. not normalized by Firehose. This service returns patient clinical data from |
GET | /Samples/Clinical_FH | Retrieve CDEs normalized by Firehose and selected for analyses. This service returns patient-level clinical da |
GET | /Samples/mRNASeq | Retrieve mRNASeq data. This service returns sample-level log2 mRNASeq expression values. Results may be filter |
GET | /Samples/miRSeq | Retrieve miRSeq data. This service returns sample-level log2 miRSeq expression values. Results may be filtered |
specification origin: http://firebrowse.org/api/api-docs
nothing on this page is a rating, an endorsement or a claim about quality. Reachability is what our probes observed from one network; answering is a floor under usefulness, not a measure of it.